PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015320P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YB
Protein Properties Length: 128aa    MW: 14694.5 Da    PI: 6.6281
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015320P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB134.43.4e-42997795
           NF-YB  7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95
                     lPianv rimkk++P+++kisk+ak+t+qec+ efisfvtsea++kc++e+r+t+ngdd++wa+++lG+++y+e+ ++ l k+re+e+
  MELO3C015320P1  9 QLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNENRRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAER 97
                    69************************************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.7E-404109IPR009072Histone-fold
SuperFamilySSF471131.26E-317103IPR009072Histone-fold
PfamPF008088.2E-26972IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.7E-133755No hitNo description
PRINTSPR006151.7E-135674No hitNo description
PRINTSPR006151.7E-137593No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MGENWESLQL PIANVERIMK KIIPQKGKIS KEAKKTMQEC ANEFISFVTS EAAQKCHNEN  60
RRTLNGDDIY WAFGSLGLDN YAEASSMLLL KFREAERIKA SDKAITFQHH QHGVEDHEYN  120
YEHHQLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B7e-35194194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A7e-35194194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451143.16e-77PREDICTED: beta-galactosidase 15-like
SwissprotO040273e-42NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A0A0LZ171e-69A0A0A0LZ17_CUCSA; Uncharacterized protein
STRINGPOPTR_0013s02030.13e-40(Populus trichocarpa)
STRINGBra018585.1-P3e-40(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.12e-43nuclear factor Y, subunit B4